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Silver Anniversary of the Human Genome Project

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25 years ago, on June 26, 2000, President Bill Clinton hosted a White House celebration to mark the first draft of the Human Genome Project (HGP). The announcement capped two years of fierce rivalry between the international human genome sequencing consortium, led by Francis Collins, MD, PhD, (National Institutes of Health) and the private takeover spearheaded by J. Craig Venter, PhD, (Celera Genomics). To mark the silver anniversary of this historic moment, GEN invited Collins and Venter to offer their reflections on 25 years of genome science (Francis Collins Reflects on Human Genome Project’s 25th Anniversary and J. Craig Venter Describes a Human Genomics Revolution Still In Progress, respectively). And we also asked eight industry leaders in the genomics space to share their perspectives on this anniversary.




Madhuri Hegde, PhD — Revvity

The announcement of the first draft of the human genome 25 years ago was a pivotal moment that transformed the life sciences. It provided the foundational blueprint for understanding human biology and disease and revolutionizing medical research and the field of diagnostics. After the completion of the HGP, it gave researchers the ability to sequence individual genomes to support the development of tailored therapeutics for an individual’s genetic mutation and should in the future continue to provide the basis for targeted therapies and precision medicine.



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Madhuri Hegde, PhD
Senior Vice President and CSO
Revvity

Revvity, which refocused in 2023 to specialize in diagnostics and life sciences, has significantly benefited from the HGP. By leveraging genome sequencing technologies and other advanced tools, Revvity has driven innovation in disease research, drug development, and functional genomics. The company operates a global network of clinical laboratories (in the U.S., U.K., China, India, and Sweden), conducting extensive genomic sequencing, including in healthy and sick newborns through ultra-rapid sequencing. Revvity, a global leader in newborn screening, can support laboratories looking to expand into newborn sequencing with its NeoNGS portfolio.

Additionally, Revvity’s Dharmacon portfolio, plays a key role in functional genomics by developing siRNA reagent libraries for targeted gene silencing. Revvity supports drug discovery by providing tools that help identify drug targets and predict drug efficacy. All these efforts are part of a broader precision medicine approach, integrating diagnostics, therapeutic development, and genomics into a cohesive ecosystem.



Gilad Almogy, PhD — Ultima Genomics

Since the announcement of the HGP in June 2000, genomic information has become foundational to the life sciences. Today, virtually no area, whether drug development, population health, newborn screening, or oncology, functions without it.

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Gilad Almogy, PhD
Founder and CEO
Ultima Genomics

And yet, it still feels like we’re in the early days of the genomic revolution. Sequencing a single human genome is interesting, but its standalone value is often limited. While some monogenic diseases can be traced to a single mutation, most genomic variation has far more complex, context-dependent effects. The real power of genomics emerges at scale, when we can compare across large populations and link genomic data to electronic health records across broad, diverse datasets.

By the time I founded Ultima Genomics at the end of 2016, it was already clear that the genome was more intricate than initially understood. The protein-encoding exome represents just 1–2% of the genome, yet the remaining 98% is now known to contain vital regulatory, structural, and functional elements. Perhaps most exciting is the growing realization that a genome is not static. As cells divide, differentiate, and age, they acquire epigenetic modifications and somatic mutations. Understanding this dynamic nature is still in its early innings, but it plays a significant role in areas like cancer diagnostics. Liquid biopsy approaches that analyze circulating DNA will become increasingly central to routine medical diagnostics.

At Ultima, we remain committed to dramatically reducing the cost of sequencing so that the benefits of genomics can be accessed broadly, across populations, across geographies, and across the full complexity of human biology.



Emily LeProust, PhD — Twist Bioscience

If you look back at the June 2000 HGP announcement, the impact has been massive—especially in disease detection. Think about early cancer detection, therapy selection, or identifying minimal residual disease after treatment, to catch any recurrence as early as possible. All of that on the detection side wouldn’t have been possible without the HGP.

Emily Leproust, PhD

Emily LeProust, PhD
CEO and Co-founder
Twist Bioscience

And on the therapy side, whether we’re talking about antibodies—VHH, IgGs, bispecifics, ADCs—or gene and cell therapies, or now mRNA, the impact has been equally huge. Just in cancer alone, and more broadly across disease, the contributions have been enormous.

At the same time, reflecting on the 25-year anniversary of the HGP, I remember the early hype—people had huge expectations. But 10 years in, many were disappointed. Everything we had predicted was starting to happen—but not on the timeline people hoped for.

To me, this illustrates something I think about a lot: people overestimate what they can do in the short term, and underestimate what they can achieve in the long term. This is the perfect example. Twenty-five years later, the HGP is an absolute, smashing success. It’s had a profoundly positive impact on human health. But in the short term, the breakthroughs were slow—because science just takes time.

We were deeply inspired by what happened on the sequencing side. The Human Genome Project was about reading DNA, and it sparked an explosion in companies developing tools for DNA sequencing—think of 454, Ion Torrent, Illumina.

At Twist, we wanted to do the same thing for writing DNA. We were certain that if reading could be industrialized, then writing could too. In sequencing, you take a sample, put it in a machine, and get a digital file. What we do at Twist is the opposite: you give us a digital file, it goes into our system, and we deliver DNA—a physical product. We’re writing DNA from scratch.

Without the HGP, I don’t know if we would’ve had the courage to pursue DNA writing. But seeing what was possible with sequencing gave us the belief that the same kind of innovation could happen in synthesis.

We’re working to make traditional cloning obsolete. On our website, you can upload a DNA sequence as a file, and we synthesize it from scratch and ship it to you—for use in diagnostics, drug discovery, or basic biological research.

Even though we write DNA, every piece we produce is verified with next-generation sequencing. We couldn’t do what we do without the advances from the Human Genome Project. To write and deliver high-quality DNA, we rely on sequencing technologies to confirm accuracy. It’s an ecosystem built on itself.



Rebecca Critchley-Thorne, PhD — Castle Biosciences

The completion of the Human Genome Project (HGP) has had a transformative mpact on scientific research. It accelerated the discovery of novel genes and dentified new pathways in diseases, including cancer. This milestone also spurred the development of advanced sequencing technologies, gene expression analysis, and bioinformatics approaches, enabling the analysis of vast amounts of data. Traditional analysis methods were no longer sufficient for this volume and complexity, creating a need for machine learning techniques to extract meaningful insights.

Rebecca Critchley-Thorne

Rebecca Critchley-Thorne, PhD
Vice President, R&D
Castle Biosciences

Beyond identifying mutations, the project enabled us to investigate biological pathways, uncovering the complex biology of cancer and other diseases. This molecular information is now used in the multigene expression profile and spatial omics tests developed at Castle Biosciences. These technologies in turn help drive innovation in diagnostic, prognostic, and predictive tools, all of which have significantly advanced personalized medicine.

Historically, treatment pathway decisions have been based on broad, population-level clinical and pathology features, which often did not reflect the underlying biology of an individual’s disease. Tests like those we offer now allow treatment pathway decisions to be guided by a patient’s specific molecular profile.

Castle’s evolution began by asking: Where can treatment pathway decisions be improved to extend a patient’s life or forgo a procedure or therapy that the patient is unlikely to benefit from and thus avoid unnecessary side effects and costs? And how can we harness the outcomes of the HGP to develop tests that guide more personalized, risk-aligned management decisions? Our first test, DecisionDx-UM, was launched for patients with uveal melanoma, a rare but deadly eye cancer. This test is now part of the standard-of-care for newly diagnosed uveal melanoma patients. It measures the expression of multiple genes to determine a patient’s risk of experiencing metastasis based on the unique biology of their primary tumor. We now offer a portfolio of five clinical tests for patients with skin cancers, Barrett’s esophagus and uveal melanoma, four of which use gene expression profiling technology made possible by the HGP.



John Leonard, MD — Intellia Therapeutics

The completion of the HGP represents a fundamental breakthrough in biological sciences and human health. It is also a map for the buried treasure that all of us have been looking for as we try to understand how genetics underlies the disease process and human health.

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John Leonard, MD
President and CEO
Intellia Therapeutics

Intellia Therapeutics uses CRISPR technology as the basis of our medicines because of its incredible specificity. We’re able to pick out a specific sequence anywhere in the human genome and manipulate the genome in that sequence. Having the map of where to deploy that technology is absolutely foundational to our work. Without the human genome sequence serving as a known map, it would be difficult for us to know where to deploy CRISPR, and Intellia Therapeutics, as we know it today, would be unlikely to exist.



Gudrun Strengel, PhD — AlidaBio

The impact of the HGP has been truly transformative. It has fundamentally changed how research is conducted and how we access genomic information for healthcare. With sequencing available as a routine tool in labs around the world, the research and application landscape has changed profoundly.

One of the most widely recognized areas of impact is in personalized medicine, particularly oncology. Other critical applications include prenatal testing, while adults can now assess their risk for diseases like cancer through BRCA2 testing. Then there are gene, DNA, and RNA therapies. CRISPR gene editing has opened the door to potentially curing diseases at the DNA level. We already have the first FDA-approved CRISPR-based therapy for sickle cell disease. Researchers are now focused on improving delivery mechanisms and ensuring high on-target precision.

Gudrun Strengel

Gudrun Strengel, PhD
CEO & Co-Founder
AlidaBio

RNA therapies are especially close to my heart, as they are related to the focus of AlidaBio. These therapies manipulate gene expression, using RNA interference (RNAi) or antisense oligonucleotides to regulate which genes are expressed. A newer area of science involves editing RNA itself to correct mutations. I would also highlight synthetic biology—the ability to reprogram bacteria to produce biofuels or drugs at scale, replacing inefficient chemical synthesis—and the growing understanding of the microbiome.

Without DNA sequencing, AlidaBio would not exist. We develop next-gen sequencing and other tools to detect RNA modifications, which represent an epigenetic layer of regulation. The idea of RNA sequencing is rooted in the insight that DNA alone does not provide a complete picture. The human body contains more than 250 distinct cell types, each with its own gene expression pattern governed by epigenetic modifications. Think of this as the second phase of the HGP—understanding how genomic instructions are read, regulated, and interpreted by cells. RNA modifications, impacting protein translation, RNA stability, localization, and RNA splicing, provide nuanced layers of control that allow cells to rapidly shift their gene expression programs (and thus their functional state) in response to stimuli.

Our research depends heavily on the reference genome for sequence alignment but the field still needs much deeper exploration of epigenetic regulation mechanisms. Some people question how “actionable” the human genome really is. The answer is: it is extremely actionable—once we understand how cells use and regulate genetic information.



Steve Barnard, PhD — Illumina

One of the ways I like to explain the 2000 HGP White House announcement is through an analogy. It was akin to the first moon landing—a huge milestone, marking the peak of the space race of the 1960s. Fast forward to 2003, when the HGP was essentially completed after 13 years of effort. That moment was the spark that ignited the genomic age. If you look at the major scientific achievements of the past 50-100 years, this one stands out. It was a breakthrough that gave us the ability to truly understand genetics at the human level, a pivotal moment in science and medicine.

Steve Barnard

Steve Barnard, PhD
Chief Technology Officer
Illumina

It is extraordinary to reflect on how far we have come since 2000 in bringing these breakthroughs to scale. Looking back, we had this perfect wave going on at that time, positioning Illumina to lead what would become the NGS revolution. Illumina was founded in 1998; at the same time, David Klenerman, PhD, and Shankar Balasubramanian, PhD, (University of Cambridge) were working on the foundational chemistry behind sequencing-by-synthesis (SBS), and co-founded Solexa, which developed the Genome Analyzer in 2006. Illumina was also advancing array technology, focused on gene expression and SNP genotyping. This work was crucial for the global HapMap Project.

The HGP provided a vital reference map of the genome, which is where Illumina’s decision to acquire Solexa became pivotal. We acquired the chemistry and could actually re-sequence the human genome. This distinction is important: while many technologies today are referred to as “next-gen sequencing”, the more accurate term is perhaps “next-gen resequencing.” One needs the reference genome to effectively resequence.

Acquiring Solexa and SBS chemistry enabled us to make that reference genome actionable. Illumina already had the essential ingredients to build optical instrumentation and flow cells, coupled with expertise in biochemistry, synthetic chemistry, surface chemistry, and informatics. Together with Solexa’s innovative SBS chemistry, we created the synergy to build instruments that would enable us to scale sequencing technologies and leverage the reference human genome.

Since then, Illumina has launched more than 10 sequencers, each based on the principle that if we could resequence at higher throughput, faster, better, and cheaper—with the quality, accuracy, and reproducibility needed for science and medicine—then we could expand the applications of genomics. This approach has led to the creation of a market worth more than $50 billion, with applications ranging from drug and vaccine development to population sequencing to cancer research and diagnostics and agricultural improvements. It is hard to fully grasp how much the genomic revolution has transformed so many fields. It is kind of amazing to think about!



Matthew Kellinger, PhD — Element Biosciences

The Human Genome Project (HGP) truly was the biological equivalent of landing on the moon. It was a game changer: massive in scale, bold in ambition, and incredibly complex to accomplish. Its completion sparked a new wave of innovation, advancing the technologies we rely on, expanding what’s possible, and paving the way for breakthroughs like new cancer therapies and precision medicine.

Matthew Kellinger

Matthew Kellinger, PhD Vice President of Biochemistry
and Co-founder
Element Biosciences

At the same time, it revealed just how many questions remain unanswered—questions that scientists today are passionately exploring, thanks in large part to the foundation laid by the HGP. At Element Biosciences, we owe a great deal to this milestone. We’re much more than a sequencing company. The HGP created an urgent need for innovation—to develop the tools and technologies capable of addressing such a monumental challenge. That push for progress inspires our work today.

In hindsight, the HGP was both elegant and awe-inspiring, yet it relied heavily on brute-force methods. That sparked a wave of efforts aimed at making genomic sequencing more accessible, accurate, and efficient. One of Element’s guiding principles is to pursue intelligent science—solutions that are thoughtful, effective, and fast. The tools we’ve developed are a direct result of that legacy. Being able to sequence a genome in a single day for just a few hundred dollars is an extraordinary leap forward, especially when compared to the time and cost constraints of the original project.

Our focus on multimodal analysis also stems from the evolution of thinking that followed the HGP. As the field advanced, it became clear that while the genome offers a crucial foundation for understanding biology, it is only part of the story. That realization has led us and others to adopt a more integrated approach. Today, we’re building tools that can simultaneously analyze RNA and proteins, enabling deeper biological insights and driving the development of better therapeutics.

Ultimately, all of this traces back to the HGP and the immense hope and excitement it ignited—a legacy that continues to shape our mission and our vision for the future.

The post Silver Anniversary of the Human Genome Project appeared first on GEN - Genetic Engineering and Biotechnology News.
 
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